بسم الله الرحمن الرحيم
It is makrooh to manage two Jumuah salah in one mosque. Hence two Jumuah jamah should not be done in one mosque. However, if some people miss Jumuah salah then you may offer Jumuah salah with jamah out of the mosque in some other place and not in the mosque.
Allah knows Best!
Darul Uloom Deoband
This answer was collected from the official ifta website of Darul Uloom Deoband in India.